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As a reference, it took about 60 minutes for the calculation to predict 5 models for RVFV NSs (the sequence given as example above) to take place on mazuelo. Once it is done, you can go to the results folder and analyze your results. A description of the various files produced by the program is provided on the GitHub page of AlphaFold.

Using pTM models

In order to use pTM models, you need to set the ALPHAFOLD_PTM environment variable before running AlphaFold:

export ALPHAFOLD_PTM=true

Using AlphaFold via a web interface

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