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https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb

Using AlphaFold in NMRbox

"NMRbox is a resource for biomolecular NMR (Nuclear Magnetic Resonance) software. It provides tools for finding the software you need, documentation and tutorials for getting the most out of the software, and cloud-based virtual machines for executing the software."

After registering, it is possible to log into a virtual machine and run AlphaFold predictions (version 2.1.1). At the moment, only T4 equipped VMs are available for this task: argon.nmrbox.org, oxygen.nmrbox.org, rubidium.nmrbox.org, and zirconium.nmrbox.org. Once logged in:

• Open a terminal and go to the desired output directory
• Create a FASTA file containing the protein sequence of interest
• Run AlphaFold using the alphafold FASTA_file.fasta command. Other options are availables, see alphafold -h.