...
Three options on how to run AlphaFold are described here:
Using AlphaFold via SBGrid
| Ancre | ||||
|---|---|---|---|---|
|
The current version installed on our server is Alphafold2 2.1.1
...
All protein sequences have to be in the same FASTA file.
Using AlphaFold via
...
Google Colab
| Ancre | ||||
|---|---|---|---|---|
|
DeepMind, in collaboration with Google, has provided users with a Colab notebook to run AlphaFold2 (currently version 2.1.0). The notebook can be opened at the address below, and Instructions are provided in the notebook as to how to proceed:
...
https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb
Using AlphaFold in NMRbox
| Ancre | ||||
|---|---|---|---|---|
|
"NMRbox is a resource for biomolecular NMR (Nuclear Magnetic Resonance) software. It provides tools for finding the software you need, documentation and tutorials for getting the most out of the software, and cloud-based virtual machines for executing the software."
...