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//It might be easier to process images from a folder
//You would need to customize this path to your computer
InputDir="/Users/nicolas/Desktop/Input/";

// You could also get a prompt to select the InputDir
// InputDir = getDirectory("Choose a Directory ");


// And to save results in an output folder
// You would need to customize this path to your computer
//OutputPath="/Users/nicolas/Desktop/Output/";

//You could also create a new folder based on the name of the input folder
ParentPath=File.getParent(InputDir); 
InputDirName=File.getName(InputDir);
OutputDir=ParentPath+File.separator+InputDirName+"_Results";
i=1;

while(File.exists(OutputDir)){
OutputDir=ParentPath+File.separator+InputDirName+"_Results"+"-"+i;
i++;
}
File.makeDirectory(OutputDir);
OutputPath=OutputDir+File.separator;


//Then you can measure all values for all ch and all images

ListFile=getFileList(InputDir); 
run("Set Measurements...", "area mean standard modal min centroid center perimeter bounding fit shape feret's integrated median skewness kurtosis area_fraction stack display redirect=None decimal=3");
run("Clear Results");

// It might be faster to work in batchmdoe
setBatchMode(true);


for (Filei=0; Filei<ListFile.length; Filei++){
FilePath=InputDir+ListFile[Filei];
open(FilePath);
ImageName=getTitle();
selectWindow(ImageName);
run("Select None");
run("Measure Stack...");
selectWindow(ImageName); run("Close");
}
selectWindow("Results");
saveAs("Text", OutputPath+"Overall_Measurements.csv");
selectWindow("Results"); run("Close");