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Olympus BX63 upright microscope

P-G Desmarais Building, Room 5308-2
Advanced Microscope Tier 1 usage price

Instrument awarded to Dr Marina Martinez by the Canadian Foundation for Innovation (CFI)

  • Applications

    • Transmitted light, Bright-field
    • Polarized light, DIC

    • Fluorescence

    • Color camera

  • Light sources

    • LED lamp for transmitted light

    • X-Cite NOVEM-S XT910 for fluorescence

SourceExcitation wavelengths (nm)Compatible fluorophoresNominal power (mW)
365

DAPI, Hoechst


435
CFP
475
FITC, GFP
500-600-
[500-600]

509/22
[498-520]		YFP
554/23
[542-565]		TRITC
578/21
[567-588]		mCherry
635


Cy5


735


Cy7


  • Objectives

    1. 4x/0.16 Air WD 16

    2. 10x/0.4 Air WD 3.1

    3. 20x/0.75 Air WD 0.6

    4. 40x/0.95 Air WD 0.18

    5. 60x/1.35 Oil WD 0.15

    6. 100x/1.4 Oil WD 0.13

    7. Empty

PositionNomMarqueNom completIdentifiantOuverture numériqueImmersionDistance de travail (mm)Transmittance
(% [nm])		TechniqueÉpaisseur du couvre-objet (mm)
14x/0.16 AirOlympus4x/0.16 Air UPlanSApo

UPLXAPO4X.pdf

0.16Air16

>90% at 550nm

BF, Fluo-
210x/0.4 AirOlympus10x/0.4 Air
UPlanSApo		UPLXAPO10X.pdf0.4Air3.1

~90% at 550nm

BF, Pol, DIC, Fluo0.17
3

20x/0.75

Olympus20x/0.75 Air
UPlanSApo

UPLXAPO20X.pdf

0.75

Air

0.6

>90% at 550nm

BF, Pol, DIC, Fluo0.17
4

40x/0.95 Air

Olympus40x/0.95 Air
UPlanSApo

UPLXAPO40X.pdf

0.95

Air

0.18

~90% at 550nm

BF, Pol, DIC, FluoAdjustable 0.11-0.23
560x/1.35 OilOlympus60x/1.35 Oil 
UPlanSApo

UPLXAPO60XO.pdf

1.35
Oil
0.15

~90% at 550nm

BF, Pol, DIC, Fluo0.17
6

100x/1.4 Oil

Olympus100x/1.4 Oil 
UPlanSApo

UPLXAPO100XO.pdf

1.4
Oil
0.13

~90% at 550nm

BF, Pol, DIC, Fluo0.17
7

Vide









BF: Bright-field
Pol: Polarized light
DIC: Differential interference contrast
Fluo: Fluorescence

  • Filters

    1. Empty
    2. DAPI
    3. FITC
    4. TRITC
    5. mCherry
    6. Empty
    7. Empty
    8. U-FDICT DIC Analyzer (Nomarski prism)
PositionNameBrandIDExcitation FilterDichroic mirrorEmission FilterComments
1Empty





2DAPIOlympusU-FUNA360-370 410LP420-460 

U-FUNA

3FITCOlympusU-FBNA470-495 505LP510-550 

U-FBNA

4TRITCOlympusU-FGWA530-550 570LP575-625 

U-FGWA

5mCherryOlympusU-FYW540-585 595LP600LP

U-FYW

6Empty





7Empty





8

DIC Analyzer

OlympusU-FDICT DIC---DIC Analyzer

  • Detector

    • Olympus DP80 Dual sensors (color and monochrome) CCD camera, 6.45 x 6.45 um pixel size,15 images/s at full frame 55% QE at 550nm
      Color mode 4080 x 3072 pixels, 24-bit
      Monochrome mode 1360 x 1024 pixels, 14-bit
      Olympus_DP80 Camera_User Guide.pdf

  1. Remove the dust cover from the microscope
  2. Turn on the computer (#1)
  3. Turn on the microscope power bar (#2)

  4. Turn on the microscope touchscreen (switch is located at the back on the right of the touch screen) (#3)

  5. Use your UdeM credentials to log in to Windows

    The first time you use the instrument, you need to import the microscope settings into the software. To do this follow the instructions in the First use section below.

  6. Start the software CellSens Dimension

When using the microscope for the first time, you need to import the microscope settings into the software. You will usually do this during the training session.
This procedure can also be performed if something is not working properly and if you want to reset the software to its original settings.

This process will delete all experiment protocols and reset the software to the original settings for this specific microscope.

  1. If open, close the software CellSens Dimension and wait until it is completely closed (up to 30 seconds)
  2. On your Desktop open the folder Documentation
  3. Double-click Settings for BX-63
  4. A script will run and a black window will briefly appear
  5. You can now reopen the software CellSens Dimension

Cette procédure permet de mettre le microscope dans une configuration sécuritaire et d'effectuer une calibration de la mise au point. À la fin de cette procédure le microscope sera prêt pour l'acquisition.

On the microscope touch screen :

  1. Press sur Full Operation

  2. Press 4x to select the 4x objective

    The 4x objective is the safest because it has the greatest working distance (16 mm). The sample will appear perfectly sharp long before the lens approaches it. It is recommended to always first focus with the safest lens. The objectives are para-focal, focusing with the safest objective will then allow you to easily find your sample with another objective.

  3. Press Escape to raise the lenses to their highest position

  4. Place the test slide on the microscope stage with the coverslip toward the objective

    Important

    Always use the test slide to perform the first focus.

     

  5. If necessary, move the stage so that the sample is centered on the objective

On the computer

  1. Open the CellSens Dimension software

  2. Wait for the software to open (yes it's long...)

  3. At the bottom right of the window, select BF or the desired fluorescence (DAPI, FITC, TRITC or mCherry) to activate the configuration

  4. Adjust the focus with the main dial while looking through the eyepieces until the image is perfectly sharp

    The focus is around Z = 19000 um. The Z position value is visible on the touch screen.

  5. At the bottom right of the window, select Off to turn off the illumination

Important

First focus with the safest lens before selecting another lens and continuing with secondary focus.

After performing the first focus, on the microscope touch screen:

  1. Press 10x, 20x or 40x to select the desired lens

    The 40x objective is the best Air objective because it has the greatest number of optical corrections (Plan Apochromat) and the largest numerical aperture (0.95). It offers a lateral resolution of 420nm at a wavelength of 550nm.

  2. At the bottom right of the window, select BF or the desired fluorescence (DAPI, FITC, TRITC or mCherry) to activate the configuration

  3. Adjust the focus with the precision dial while looking through the eyepieces until the image is perfectly sharp

  4. Select Off to turn off the illumination
  5. Your sample is ready for acquisition!

After performing the first focus, on the microscope touch screen:

  1. Press 60x Oil (1.35), 100x Oil (1.4) to select the desired lens. The microscope will automatically raise the objectives so that the sample is accessible.

    The 100x objective is the best oil objective because it has the highest number of optical corrections (Plan Apochromat) and the largest numerical aperture (1.4). It offers a lateral resolution of 240nm at a wavelength of 550nm.

  2. Place a drop of oil on your sample

In the CellSens Dimension software

  1. Click OK
  2. At the bottom right of the window, select BF or the desired fluorescence (DAPI, FITC, TRITC or mCherry) to activate the configuration
  3. Adjust the focus with the precision dial while looking through the eyepieces until the image is perfectly sharp
  4. Select Off to turn off the illumination
  5. Your sample is ready for acquisition!
  • Files can be saved temporarily (during acquisition) to local C: drive (desktop)
  • At the end of each session, copy your data to your external drive and delete it from local C: drive
  • You can store your files on the D: drive (Data Storage). If you do, please create one folder per laboratory using the principal investigator's last name. Inside, create a folder per user using the following nomenclature (First Name_Last Name).

Important

In any case, do not store your files on the C: drive.

  1. Save your data
  2. Close the software CellSens Dimension
  3. Transfer your data to the D: drive (Data Storage) or to your external drive and delete it from the local C: drive
  4. Turn off the computer
  5. If oil objectives were used, clean it with lens cleaner and lens paper (not Kimwipes)
  6. Turn off the microscope power bar (#2)
  7. Replace the dust cover on the microscope

Important Reminders

  • Collect your samples, especially those in the microscope
  • Leave the microscope and workspace clean

The following schematics depict the light path for transmitted (bright-field and Phase Contrast) and reflected (fluorescence) lights.



  • Create BF light path
  • Buy multi-bandpass filters
  • Complete installation setup
  • Scrip for CellSens personalization
  • System relocated to Room 5308-2
  • Added to Faces
  • XCite NOVEM-S Installed

Stand

  • Olympus BX63 Serial 0G00080

Condenser

  • Motorized condenser

Camera

  • Olympus DP80 Serial 8K48090

Stage

  • Motorized stage SHe Serial 127808

Workstation

  • HP Z4 Workstation
  • Intel Xeon W-2102 @ 2.9GHz
  • RAM 32 GB DDR4 2400 MHz
  • OS 1 TB GB SSD 550 MB/s
  • 2 TB HD Data Storage (2 x 1 TB spanned volume) 162 MB/s
  • Video Card nVidia Quadro P620 2GB DDR5 dedicated memory
  • Monitor Dell P2415Q display 24' 3840 x 2160 
  • Software CellSens Dimension v3.2

Consumables

Troubleshooting

Please ensure that the microscope touchscreen is turned on. The switch is not easily accessible and is located on the back at the right of the touchscreen pad.

FAQ

No. This is an upright microscope designed to look at specimen mounted between a slide and a coverslip


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