Nikon TE2000-E inverted microscope

Bombardier Building, Room 3132
Usage Price Advanced Microscope Tier 1

Instrument awarded to Dr. Steve Michnick by the Canadian Foundation for Innovation (CFI #200249) in 2001


Applications

  • Inverted microscope
  • Widefield imaging
    • Brightfield
    • Phase Contrast
    • Interference Contrast (DIC)
    • Fluorescence
  • Live imaging
  • Timelapse imaging
  • Incubation

Description

Light sources

  • Halogen lamp for transmitted light

  • X-Cite exacte for fluorescence

Emission (nm)

Nominal power (mW)

Objectives

  1. 4x/0.1 Air
  2. 10x/0.30 Ph1 Air
  3. 20x/0.45 Ph1 Air
  4. 40x/0.95 Air
  5. 60x/1.4 Ph3 Oil
  6. 100x/1.45 Oil
PositionNameBrandFull nameIdentifierMagnificationNumerical apertureImmersionWorking distance (mm)Transmittance
(% [nm])
ApplicationsCover glass thickness (mm)
14x/0.10 AirNikon4x/0.1 Plan

MRL00042

4x0.1Air30>80% [400-900]BF, Fluo-
210x/0.30 Ph1 AurNikon10x/0.30 Plan Fluor Ph1 DL

MRH20101
MRH20105

10x0.3Air15.2>80% [440-700]BF, PhC, Fluo1.2 !
320x/0.45 Ph1 AirNikon20x/0.45 Plan Fluor ELWD Ph1 ADL

MRH48230
MRH48220

20x0.45Air7.4>80% [350-870]BF, PhC, Fluo0-2
440x/0.95 AirNikon40x/0.95 Plan Apo DIC M/N2

MRD00400
MRD70470

40x0.95Air0.14>80% [440-760]BF, Fluo0.11-0.23
560x/1.4 Ph3 OilNikon60x/1.4 Plan Apo
Ph3 DM

MRD31600

60x1.4Oil0.21
BF, PhC, Fluo0.17
6100x/1.45 OilNikon100x/1.45 Plan Apo Lambda  OFN25 DIC N2

MRD01905
MRD71970

100x1.45Oil0.13>80% [460-720]BF, Fluo0.17
-40x/0.60 Ph2 AirNikonPlan Fluor 40x/0.60 Ph2 DIC M ELWD 0-2

MRH48430

40x0.6Air2.7-3.7>80% [350-850]BF, PhC, Fluo0-2
-40x/0.60 AirNikonS Plan Fluor 40x/0.6 ELWD DIC N1

MRH08430

40x0.6Air2.8-3.6>80% [350-850]BF, Fluo0-2
-40x/0.90 AirNikonS Fluor 40x/0.90 DIC M/N2

NA

40x

0.9

Air0.3NABF, Fluo0.11-0.23
-60x/0.70 AirNikonPlan Fluor 60x/0.70 ELWD DIC M/N1

MRH08630

40x

0.7


Air1.5-2.1>80% [380-880]BF, Fluo0.5-1.5
-60xA/1.40 OilNikonPlan Apo 60xA/1.40 Oil DIC H

MRD71670

60x1.4Oil0.21>80% [480-700]BF, Fluo0.17
-60x/1.40 OilNikonPlan Apo VC 60x/1.40 Oil DIC N2

MRD71670

60x1.4Oil0.13>80% [480-700]BF, Fluo0.17
-100x/0.85 AirNikonL Plan 100x/0.85 ODN 25

MUE35900

100x0.85Air0.85

0-0.7
-100x/1.40 OilNikonPlan Apo 100x/1.4 Oil DIC H

MRD71970

100x1.4Oil0.13>80% [480-720]BF, Fluo0.17

Filters

  1. Dichroic DAPI\FITC\TRITC

  2. Dichroic CFP\YFP\Cy5

  3. Dichroic CFP\YFP\mCherry

  4. DAPI
  5. Cy3n
  6. Cy5.5

Also available

  • CFP

  • FITC

  • YFP

  • Cy3.5

  • mCherry

  • Cy5

PositionNameBrandIdentifierExcitationDichroicEmissionComments
1Dichroic
DAPI\FITC\TRITC
Chroma86013 v2
86013bs
To be used in combination with excitation and emission filters
2

Dichroic
CFP\YFP\Cy5

Chroma86008 v2


86008bs


To be used in combination with excitation and emission filters
3

Dichroic
CFP\YFP\mCherry

Chroma

89006 ET


69008bs
To be used in combination with excitation and emission filters
4DAPIChroma

31000 v2

AT350/50x

400dclp

D460/50m


5Cy3nChroma

SP102 v1

HQ546/11xQ557lp

HQ567/15m


6Cy5.5Chroma

41022

HQ665/45x

Q695lpHQ725/50m
-eCFPChroma

49001 ET

ET436/20x

T455lp

ET480/40m


-cGFPChroma

31044 v2

D436/20x

455dclp

D480/40m


-FITCChroma

41001

HQ480/40x

Q505lp

HQ535/50m


-YFPChroma

49003 ET

ET500/20x

T515lp

ET535/30m


-Cy3.5Chroma

SP103 v1

HQ581/10x

Q593lp

HQ617/40m


-mCherryChroma

49008 ET

ET560/40x

T585lpxr

ET630/75m


-Cy5Chroma

49006 ET

ET620/60x

T660lpxr

ET700/75m


Excitation filters

Emission filters

Detector

  • Hamamatsu ORCA Flash v2 C11440-22CU

    CameraHamamatsu ORCA Flash 4.0 V2

    Sensor Type

    CMOS

    Sensor Category

    Monochrome

    Nb Pixels

    4.2 M

    Pixel Layout

    2048 x 2048

    Pixel size

    6.5 um

    Sensor size

    13.312 mm x 13.312 mm 

    Sensor diameter

     mm

    Bit depth

    16-bit
    Speed at full resolution30 images/s

    Max QE

    83 %
    Readout noise1.6 e⁻

    Cooling

    -10 C Air

    Dark Current

    0.06 e⁻/pixel/sec

    Full well capacity

    30 000 e-

    Dynamic Range

    1: 37 000

    Interface

    USB 3.0

    Mount

    C-mount

User Guide

  1. If not already done, turn on the computer (#1) and use your UdeM credentials to log in to Windows
  2. Remove the dust cover from the microscope
  3. Turn on the X-Cite exacte light source (#2)
  4. Turn on the microscope power bar (#3)
  5. When using the instrument for the first time, it is necessary to import the microscope configuration into the software. See the First Use section below before starting the software
  6. Start NIS-Elements

When using the instrument for the first time, it is necessary to import the microscope configuration into the software. This procedure is usually carried out during the training session. However, it can also be used to reset the software if it does not display correctly, for example. 

Running this procedure will erase all your experiment protocols and reset the software to its original settings. If you are not sure, contact us.

  1. If NIS-Elements is open, close it and wait until it has completely shut down (this may take up to 30 seconds)

  2. On the Desktop, open the Software folder

  3. Open NIS Settings Utility
  4. Click on the Import tab
  5. Click on Browse
  6. Navigate to your C:\Users\Public\Documents
  7. Select the file Nikon_Ti2-Oko_NIS Settings.bin
  8. Click Select
  9. Select all items
  10. Click Import
  11. Click OK
  12. Close the NIS Settings Utility
  13. You can now reopen NIS-Elements

During this procedure, you will:

  • Set the microscope in a safe configuration

  • Load your sample

  • Find and adjust the focus

Once completed, your sample will be ready for acquisition.

  1. On the microscope, gently push the transmitted light arm backward

  2. In NIS-Elements, click Escape Z to move the objectives to a safe position

  3. If not done already, click on the lowest magnification objective

    The lowest magnification is the safest to use due to its long working distance: the sample will appear in focus well before the objective lens gets close to it. It is recommended to always perform the initial focusing with the lowest magnification objective. Since the objectives are parafocal, focusing with le safest objective will make it easier to locate the sample when switching to higher magnification objectives
  4. Place the test slide on the microscope stage, with the coverslip toward the objective

    Using a test slide will significantly reduce the time needed to set up the instrument

  5. If necessary, use the joystick to move the stage so the sample is centered under the objective
  6. Gently return the transmitted light arm to the vertical position

  7. In NIS-Elements, click Escape Z again to return the objectives to their normal position

  8. Click on the desired optical configuration (BF, DAPI, GFP, etc.)

  9. Click Live (») to activate the light and display the camera image

  10. Adjust the light intensity and exposure time to obtain a well-exposed image

  11. If necessary, use the image autoscaling to adjust the display settings
  12. Adjust the focus until the image is perfectly sharp

  13. Click Stop to stop the Live or on Off to turn off the light

The focus is around Z = 2030 µm. The Z-position value is displayed: 

  • On the microscope remote control: Use the Display button to navigate the display menu
  • In NIS Elements: Ti2 Pad Tab under Z value

It is possible to scan an overview image to then easily navigate your sample. It is strongly recommended to use the lowest magnification objective and whenever possible use the BF optical configuration not to bleach your sample.

After completing the initial focus:

  1. In NIS Elements, click on the desired optical configuration (BF, DAPI, GFP, etc.)
  2. Click Live (») to activate the illumination and display the camera image on the screen

  3. Adjust the light intensity and exposure time to obtain a properly exposed image

  4. If necessary, use the image autoscaling to adjust the display settings
  5. Using the Joystick navigate to the top left corner of your sample
  6. In the the XYZ overview click + to add a point and save this position
  7. Using the Joystick navigate to the bottom right corner of your sample
  8. In the the XYZ overview click + to add a point and save this position
  9. In the XYZ Overview right click and under Large Image Area select Define Area
  10. Draw a rectangle around the two points
  11. Right click again on the created region of interest and select scan preview
  12. Wait until the preview acquisition is completed

You can now directly click on the overview to navigate your sample !

First perform the initial focusing with the safest objective before selecting a higher-magnification objective

After completing the initial focus:

  1. In NIS-Elements, click on the desired objective (20x PhC or 20x DIC)

    The 20x DIC objective is the best air objective because it has the highest numerical aperture (0.75). DIC is currently not available for the 20x objective (DIC slider required).

  2. Click on the desired optical configuration (BF, DAPI, GFP, etc.)

  3. Click Live (») to activate the illumination and display the camera image on the screen

  4. Adjust the light intensity and exposure time to obtain a properly exposed image

  5. If necessary, use the image autoscaling to adjust the display settings
  6. Adjust the focus using the precision knob until the image is perfectly sharp
  7. Click Stop to stop the Live mode or click on the optical configuration Off to turn off the illumination

  8. Click Escape Z to move the objectives to a safe position

  9. On the microscope, you can remove the test slide and install your sample

  10. In NIS-Elements, click Escape Z once again to return the objectives to their normal position.

Your sample is now ready for acquisition!

After completing the initial focusing:

  1. In NIS-Elements, click Escape Z to move the objectives to a safe position

  2. Click on the 60x Oil or 100x Oil objective to select the desired lens

    The 100x objective is the best oil immersion lens because it has the highest numerical aperture (1.45).

  1. Remove the test slide

  2. Place a single drop of oil on the objective

  3. Place your sample

  4. Click Escape Z again to return the objectives to their normal position

  5. Click on the desired optical configuration (BF, DAPI, GFP, etc.)

  6. Click Live (») to activate the illumination and display the camera image on the screen

  7. Adjust the light intensity and exposure time to obtain a properly exposed image

  8. If necessary, use the image autoscaling to adjust the display settings
  9. Adjust the focus using the precision knob until the image is perfectly sharp
  10. Click Stop to stop the Live mode or click on the optical configuration Off to turn off the illumination

Your sample is now ready for acquisition!

  • Files can be saved temporarily (during acquisition) on the local C: drive (desktop)
  • At the end of each session, copy your data to your external drive and delete it from the local C: drive
  • You can store your files on the D: drive (Data Storage). If you do, please create a folder per laboratory using the principal investigator last name. Within, create one folder per user (Firstname_Lastname).

In any case, your files should be removed from the C: drive.

  1. Save your data
  2. Close NIS-Elements
  3. Transfer your data to the D: drive (Data Storage) or to your external drive and delete it from the local C: drive
  4. If used, clean oil objectives with lens cleaner and paper
  5. Select the lowest magnification objective and click Escape Z to place the objectives in a safe position
  6. IWait until the XCite fluorescent light source has been ON for at least 30 minutes and then turn it off

  7. Turn off the computer
  8. Cover the instrument with the protective dust cover
  • Take back your samples including ones in the microscope
  • Leave the microscope and the working area clean


Log

  • Perfect Focus avec LED de 780 nm et avec filtre dans le trajet lumineux LP 750 nm (inadéquat pour le Cy5.5)
  • En lumière transmise, pour que le PFS fonctionne, il faut insérer 2 filtres IR dans le trajet lumineux: celui du PFS et celui du statif près de la lampe halogène

  • Complete installation
  • Complete cleaning

Technical Datasheet

Stand

  • Nikon TE2000-E inverted
  • Nikon T-HUBC Serial 750110
  • Nikon PFS T-PFS 810060
  • Nikon T-RCP Serial 750104

Light sources

  • Transmitted Halogen light Nikon TE2-PS100W Serial 505320 12V
    • GIF Filter
    • Diffusion
    • Infra-red
    • Neutral color
    • Transmitted light shutter uniblitz VCM D1 Serial A607295
  • X-Cite exacte Model XCT10A 200 W Seria;l XCT10A-0337
    • EXFO Collimator 810-00030
    • Prior Shutter HF201HT Serial 7332
    • Prior 8 position motorized excitation filter wheel 61817
    • Nikon Manual Neutral density filters ND8 ND4
    • Manual Fluorescence field diaphragm
    • Manual Fluorescence shutter

Condenser

  • Motorized condenser
  • Lens LWD NA 0.52

  • Manual Polorizer
  • Filter turret 5 motorized positions

    1. A BF

    2. DIC M
    3. Ph1
    4. Ph2
    5. Ph3

Objectives

  • See description

Stage

  • Prior Proscan 2 H30V4 Serial 62040
  • Remote control joystick Prior CS152v2 Serial R0772128
  •  Inserts
    • 1 slide
    • Multi-well plate
    • Adapter for 3cm dish

Filters

  • See description

Detector

  • Hamamtsu ORCA Flash V2 CMOS Model C11440-22CU Serial 002162

Workstation

  • HP Z800 Workstation
  • 2 x Intel Xeon X5650 @ 2.67GHz
  • RAM 24 GB DDR3 666 MHz  (6 x 4 GB)
  • OS 500 GB SSD 530 MB/s
  • 3 TB HD Data Storage (2 TB + 1 TB spanned volume) 130 MB/s
  • Video Card AMD FirePro V5800 1 GB dedicated memory
  • Monitor Dell 2407EFP-HC 1900x1200 60Hz
  • Software NIS-Elements AR v4.20.02 Build 988 HASP ID 4683DFE6
  • Core NIS-AR 2.3x STANDARD SUA Activation date 2010-07-07 SUA paid 2x SUA Expiration date 2013-08-07
  • Modules SRM ,Filter Wheel, ND (6 dimensions), Shutter, Stage XY axis

Consumables

  • Liquid Light Guide
  • Excite exacte bulb
  • 12V halogen bulb

Troubleshooting

This can happen when the acquisition software is turned on before the camera has fully initialized.

  • Turn off NIS-Elements
  • Turn off the camera
  • Wait few seconds
  • Turn the camera back on
  • Wait until the camera has fully initialize (light at the back of the camera no longer blinks)
  • Start NIS-Elements

FAQ

Yes. This is an inverted microscope designed to look at specimen in a dish or a multi-well plate. The objectives are optimized to image through thin glass bottom multi-well plates. You may also image specimen mounted between a slide and a 0.17mm thick coverslip. For long timelapse, be aware of photo-toxicity.


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Content published under CC BY-SA 4.0. Sharing allowed under the same license with attribution: "Original content by l'Institut Courtois d'innovation biomédicale, used under CC BY-SA 4.0"